dartR -- R Package for SNP analysis
Bernd Gruber, Luis Mijangos, Carlo Pacioni, Diana Robledo Ruiz, Olly Berry and Arthur Georges
Tutorials
- Tutorial 1: RStudio Refresher
- Tutorial_2_dartR_Installation.pdf
- Tutorial 3: Data Input and Data Structures (DArT)
- Tutorial 4: Data Manipulation
- Tutorial 5: Basic Filtering
- Tutorial: Population Assignment using dartR
Technical Notes
- Tech Note: For the dartR Developer
- Tech Note: Genetic Distances and their Visualization
- TechNote: Fixed Difference Analysis
Sample Data Files
dartR contains a number of small sample files (e.g. testset.gl), but in addition, you might wish to access the following files.
- Sample csv file in 2row format as supplied by Diversity Arrays Technology PL (DArT)
- Sample csv file in 1row format as supplied by DArT
- Sample csv file containing SilicoDArT data (presence-absence) as supplied by DArT
- Sample file summarizing the service provided by DArT including explanation of locus metadata
- Sample csv file to associate individual/sample/specimen metadata to the genotypes
- Sample data file on turtles for worked examples on population assignment
- Sample data file on Pacific blue-eye for worked example on selecting a SNP panen for population assignment
They can be downloaded into your working directory for use with the tutorials.
